A couple of notes to add.
If you have a system with an isolator and run one battery down, then manually flip the isolator to
combine the batteries, the battery with a better state of charge is going to dump into the run-down battery until they equalize. This happens instantaneously when they’re combined, so you have to make sure the cables are up to the job, because you could potentially see a LOT of current (and thus heat) depending on how low one battery is. Now extrapolate that to an isolator that immediately combines the batteries when you turn the key on, it’s the same thing. This is why most isolators are voltage-sensing. They allow the alternator to come on line before combining, which gets the main battery’s state of charge perfectly topped off, so you’re not just discharging the battery with the higher voltage.It’s supported by another device (the alternator) that can help supply the current demand of the run-down battery
Also … yes, an alternator will put out current up to its maximum ability when asked for it. It doesn’t care if it’s one battery or 100 doing the asking. However, when an alternator is putting out lots of current heat and motor drag increase. I manufacturers spec a maximum current supply for alternators, but I have never seen a spec for
how long they can safely supply that current. A ridiculous example, but bear with me: if one alternator is seeing demand from 100 dead batteries it will put out it’s maximum current, and it will have to do so for a long time to charge all those batteries. At what point does it melt itself down internally? I don’t know. Certainly with dual battery system that risk seems low but it’s something to be aware of. Make sure you have the proper cooling fan behind the pulley and that the fan blades aren’t mangled up.
@MDH33 All of this technical and theory mumbo-jumbo aside, get the Blue Sea ML-ACR or the BEP unit, make sure the rating is above 500 amps, make sure your cables are fat, and go for it. You had a previous dual battery setup to go off of but if you need a diagram ping me. Also, fuse everything. I have a 300A slow blow on the positive cables running between the batteries, one for each battery about 6” from each positive terminal. The isolator is in series with that positive cable obviously.