Even though you have gotten a lot of responses I thought I would put in my two cents having just completed this mod tonight!
I did my swap on a '68 FJ40 with stock drums in the rear and disk in the front. I ended up using a master from a '98 taco because thats what I had sitting on the shelf. It ended up costing me about $100, but keep in mind that I had the master, and I work in a metal fab shop and can make my own brackets and what not(although I didn't use any

) Everybody else has covered brake lines and what not, but I do have two points to make.
1. When I did the install I was curious if the dual circuit system would actually function as one would believe. So I plumbed up the front and bled it, left the back unhooked from the drums and tried the pedal. To my amazement fluid came pouring out the rear, and at about half pedal the front disk grabbed and the pedal came to a halt well before the floor. Because of time issues and needing to work on my other rig I ended up driving it around the house and in and out of the drive way many times with out the rear hooked up all the way. Eventually all the fluid came out of the reservoir for the rear, but up until tonight the front still worked just the way it should. Keep in mind when looking at master cylinders that some appear to be a single reservoir system, thus only giving you minimal braking force until you run out of fluid. Mine looks like it has one reservoir, when in actuality it has two, there is a plastic divider inside the reservoir that converts it to a dual system.
2. This is more for the other guys talking in the thread, but I'm wondering if there will be any problems with a later model master that has a residual valve working with the front drum brakes. I could be stupid, but wouldn't that keep the slave cyls pumped up against the drums wearing out the pads quicker?
FWIW in my opinion I would do this mod, my brakes work soooooo much better now than they did before!